1JR9 Oxidoreductase date Aug 13, 2001
title Crystal Structure Of Manganese Superoxide Dismutases From Ba Halodenitrificans
authors J.Liao, M.Y.Liu, T.Chang, M.Li, J.Legall, L.L.Gui, J.P.Zhang, T.Jia D.C.Liang, W.R.Chang
compound source
Molecule: Manganese Superoxide Dismutase
Chain: A
Fragment: Green Protein
Ec: 1.15.1.1
 Organism_scientific: Virgibacillus Halodenitrificans
Organism_taxid: 1482
Other_details: Cytoplasm
symmetry Space Group: P 43 21 2
R_factor 0.220 R_Free 0.289
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.120 93.120 63.527 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand MN, ZN enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • superoxide dismutase activit...


    • Primary referenceThree-dimensional structure of manganese superoxide dismutase from Bacillus halodenitrificans, a component of the so-called "green protein"., Liao J, Liu MY, Chang T, Li M, Le Gall J, Gui LL, Zhang JP, Jiang T, Liang DC, Chang WR, J Struct Biol. 2002 Sep;139(3):171-80. PMID:12457847
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (1jr9.pdb1.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 1JR9
  • CSU: Contacts of Structural Units for 1JR9
  • Likely Quarternary Molecular Structure file(s) for 1JR9
  • Structure Factors (59 Kb)
  • Retrieve 1JR9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JR9 from S2C, [Save to disk]
  • Re-refined 1jr9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1JR9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1JR9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JR9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jr9a1, region A:2-91 [Jmol] [rasmolscript] [script source]
        - Domain d1jr9a2, region A:92-202 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jr9] [1jr9_A]
  • SWISS-PROT database: [Q7SIC3]
  • Domain organization of [Q7SIC3_BACHA] by SWISSPFAM
    • Other resources with information on 1JR9
  • Community annotation for 1JR9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science