1JS7 Dna date Aug 16, 2001
title Solution Structure Of Daauaa Dna Bulge
authors F.A.Gollmick, M.Lorenz, U.Dornberger, J.Von Langen, S.Diekmann, H.Fritzsche
compound source
Molecule: 5'-D(Gpcpaptpcpgpapapupapapgpcptpa 3';
Chain: A
Engineered: Yes
 Synthetic: Yes

Molecule: 5'-D(Cpgptpapgpcpcpgpaptpgpc)-3'
Chain: B
Engineered: Yes
Synthetic: Yes
methodSolution NMR
Primary referenceSolution structure of dAATAA and dAAUAA DNA bulges., Gollmick FA, Lorenz M, Dornberger U, von Langen J, Diekmann S, Fritzsche H, Nucleic Acids Res 2002 Jun 15;30(12):2669-77. PMID:12060684
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (228 Kb) [Save to disk]
  • Biological Unit Coordinates (1js7.pdb1.gz) 15 Kb
  • CSU: Contacts of Structural Units for 1JS7
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1JS7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JS7 from S2C, [Save to disk]
    • View 1JS7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1JS7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JS7, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1js7_B] [1js7] [1js7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1JS7
  • Community annotation for 1JS7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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