1JS8 Oxygen Storage Transport date Aug 16, 2001
title Structure Of A Functional Unit From Octopus Hemocyanin
authors M.E.Cuff, K.I.Miller, K.E.Van Holde, W.A.Hendrickson
compound source
Molecule: Hemocyanin
Chain: A, B
Fragment: C-Terminal Functional Unit, Odg
Synonym: Hemocyanin G-Type
Other_details: C-Terminal Proteolytic Fragment From 350kda Polypeptide Subunit. Native Multimer Is 10 Subunits Exhibit Symmetry.
 Organism_scientific: Octopus Dofleini
Organism_taxid: 6644
Strain: G-Type Sequence
symmetry Space Group: P 21 21 21
R_factor 0.202 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.860 168.390 58.290 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand BMA, CUO, MAN, NAG, NDG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of a functional unit from Octopus hemocyanin., Cuff ME, Miller KI, van Holde KE, Hendrickson WA, J Mol Biol 1998 May 15;278(4):855-70. PMID:9614947
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk]
  • Biological Unit Coordinates (1js8.pdb1.gz) 68 Kb
  • Biological Unit Coordinates (1js8.pdb2.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 1JS8
  • CSU: Contacts of Structural Units for 1JS8
  • Likely Quarternary Molecular Structure file(s) for 1JS8
  • Structure Factors (416 Kb)
  • Retrieve 1JS8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JS8 from S2C, [Save to disk]
  • Re-refined 1js8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1JS8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1JS8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JS8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1js8a1, region A:2503-2791 [Jmol] [rasmolscript] [script source]
        - Domain d1js8a2, region A:2792-2892 [Jmol] [rasmolscript] [script source]
        - Domain d1js8b1, region B:2503-2791 [Jmol] [rasmolscript] [script source]
        - Domain d1js8b2, region B:2792-2892 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1js8_B] [1js8] [1js8_A]
  • SWISS-PROT database: [O61363]
  • Domain organization of [HCYG_ENTDO] by SWISSPFAM
    • Other resources with information on 1JS8
  • Community annotation for 1JS8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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