1JT2 Hydrolase date Aug 20, 2001
title Structural Basis For The Substrate Specificity Of The Ferul The Cellulosomal Xylanase Z From C. Thermocellum
authors F.D.Schubot, I.A.Kataeva, D.L.Blum, A.K.Shah, L.G.Ljungdahl, J.P. C.Wang
compound source
Molecule: Protein (Endo-1,4-Beta-Xylanase Z)
Chain: A
Fragment: Residues 20-287
Synonym: Feruloyl Esterase, Xylanase Z, 1,4-Beta-D-Xylan Xylanohydrolase Z;
Ec: 3.2.1.8
Engineered: Yes
Mutation: Yes
Organism_scientific: Clostridium Thermocellum
Organism_taxid: 1515
Gene: Xynz
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21b
symmetry Space Group: P 61 2 2
R_factor 0.187 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.539 64.539 222.818 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand FER enzyme Hydrolase E.C.3.2.1.8 BRENDA
note 1JT2 is a representative structure
related structures by homologous chain: 1JJF
Primary referenceStructural basis for the substrate specificity of the feruloyl esterase domain of the cellulosomal xylanase Z from Clostridium thermocellum., Schubot FD, Kataeva IA, Blum DL, Shah AK, Ljungdahl LG, Rose JP, Wang BC, Biochemistry 2001 Oct 23;40(42):12524-32. PMID:11601976
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (1jt2.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 1JT2
  • CSU: Contacts of Structural Units for 1JT2
  • Likely Quarternary Molecular Structure file(s) for 1JT2
  • Structure Factors (273 Kb)
  • Retrieve 1JT2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JT2 from S2C, [Save to disk]
  • Re-refined 1jt2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JT2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JT2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JT2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jt2a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jt2] [1jt2_A]
  • SWISS-PROT database: [P10478]
  • Domain organization of [XYNZ_CLOTH] by SWISSPFAM
  • Other resources with information on 1JT2
  • Community annotation for 1JT2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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