1JWT	Hydrolase	date	Sep 05, 2001
title	Crystal Structure Of Thrombin In Complex With A Novel Bicycl Inhibitor
authors	S.Levesque, Y.St-Denis, B.Bachand, P.Preville, L.Leblond, P.D.Win J.J.Edmunds, J.R.Rubin, M.A.Siddiqui
compound		source
Molecule: Prothrombin Chain: A Fragment: Residues 328-622 Synonym: Coagulation Factor II Ec: 3.4.21.5 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: C 1 2 1	R_factor 0.182 R_Free 0.301
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.540 72.180 73.410 90.00 100.99 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	BLI BindingDB	enzyme	Hydrolase E.C.3.4.21.5 BRENDA
related structures	by homologous chain: 1ID5, 1YCP, 4THN
Gene Ontology	Chain Function Process Component A
Primary reference	Novel bicyclic lactam inhibitors of thrombin: potency and selectivity optimization through P1 residues., Levesque S, St-Denis Y, Bachand B, Preville P, Leblond L, Winocour PD, Edmunds JJ, Rubin JR, Siddiqui MA, Bioorg Med Chem Lett 2001 Dec 17;11(24):3161-4. PMID:11720865

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk] Biological Unit Coordinates (1jwt.pdb1.gz) 49 Kb LPC: Ligand-Protein Contacts for 1JWT CSU: Contacts of Structural Units for 1JWT Likely Quarternary Molecular Structure file(s) for 1JWT Structure Factors (106 Kb) Retrieve 1JWT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1JWT from S2C, [Save to disk] Re-refined 1jwt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1JWT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1JWT

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1JWT, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1jwta_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jwt] [1jwt_A] SWISS-PROT database: [P00734] Domain organization of [THRB_HUMAN] by SWISSPFAM Domain found in 1JWT: [Tryp_SPc ] by SMART

Other resources with information on 1JWT

Community annotation for 1JWT at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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