1K72 Hydrolase date Oct 18, 2001
title The X-Ray Crystal Structure Of Cel9g Complexed With Cellotri
authors D.Mandelman, A.Belaich, J.P.Belaich, N.Aghajari, H.Driguez, R.Has
compound source
Molecule: Endoglucanase 9g
Chain: A, B
Ec: 3.2.1.4
Engineered: Yes
Organism_scientific: Clostridium Cellulolyticum
Organism_taxid: 1521
Gene: Celccg
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Pgex-5x-2
Expression_system_plasmid: Pet-22b
symmetry Space Group: P 1
R_factor 0.166 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.000 57.600 86.800 93.60 100.80 99.50
method X-Ray Diffractionresolution 1.80 Å
ligand BGC, CA, GLC, GOL, MG, SCH enzyme Hydrolase E.C.3.2.1.4 BRENDA
related structures by homologous chain: 1GA2, 1KFG
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceX-Ray crystal structure of the multidomain endoglucanase Cel9G from Clostridium cellulolyticum complexed with natural and synthetic cello-oligosaccharides., Mandelman D, Belaich A, Belaich JP, Aghajari N, Driguez H, Haser R, J Bacteriol 2003 Jul;185(14):4127-35. PMID:12837787
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (209 Kb) [Save to disk]
  • Biological Unit Coordinates (1k72.pdb1.gz) 203 Kb
  • LPC: Ligand-Protein Contacts for 1K72
  • CSU: Contacts of Structural Units for 1K72
  • Likely Quarternary Molecular Structure file(s) for 1K72
  • Retrieve 1K72 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1K72 from S2C, [Save to disk]
  • View 1K72 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1K72
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1K72, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1k72a1, region A:3-456 [Jmol] [rasmolscript] [script source]
        - Domain d1k72a2, region A:457-614 [Jmol] [rasmolscript] [script source]
        - Domain d1k72b1, region B:2-456 [Jmol] [rasmolscript] [script source]
        - Domain d1k72b2, region B:457-614 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1k72_A] [1k72] [1k72_B]
  • SWISS-PROT database: [P37700]
  • Domain organization of [GUNG_CLOCE] by SWISSPFAM
  • Domain found in 1K72: [CBM_3 ] by SMART
  • Other resources with information on 1K72
  • Community annotation for 1K72 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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