1KAF DNA Binding Domain Of The Phage T4 Transcription Factor MotA (AA105-211) date
authors Li, N., Sickmier, E.A., Zhang, R., Joachimiak, A., White, S.W.
compound source
symmetry
R_factor
R_Free 0.2580000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.60
note 1KAF is a representative structure
Primary referenceThe MotA transcription factor from bacteriophage T4 contains a novel DNA-binding domain: the 'double wing' motif., Li N, Sickmier EA, Zhang R, Joachimiak A, White SW, Mol Microbiol 2002 Mar;43(5):1079-88. PMID:11918797
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk]
  • Biological Unit Coordinates (1kaf.pdb1.gz) 20 Kb
  • Biological Unit Coordinates (1kaf.pdb2.gz) 21 Kb
  • Biological Unit Coordinates (1kaf.pdb3.gz) 22 Kb
  • Biological Unit Coordinates (1kaf.pdb4.gz) 20 Kb
  • Biological Unit Coordinates (1kaf.pdb5.gz) 20 Kb
  • Biological Unit Coordinates (1kaf.pdb6.gz) 20 Kb
  • CSU: Contacts of Structural Units for 1KAF
  • Likely Quarternary Molecular Structure file(s) for 1KAF
  • Retrieve 1KAF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KAF from S2C, [Save to disk]
    • View 1KAF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1KAF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KAF, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1kafa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1kafb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1kafc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1kafd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1kafe_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1kaff_, region F [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1kaf_B] [1kaf_E] [1kaf_D] [1kaf_A] [1kaf_C] [1kaf] [1kaf_F]
  • SWISS-PROT database: [P22915]
  • Domain organization of [MOTA_BPT4] by SWISSPFAM
    • Other resources with information on 1KAF
  • Community annotation for 1KAF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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