1KLD Growth Factor date Jan 16, 1996
title Solution Structure Of Tgf-B1, Nmr, Models 18-33 Of 33 Struct
authors A.P.Hinck, S.J.Archer, S.W.Qian, A.B.Roberts, M.B.Sporn, J.A.Weat M.L.S.Tsang, R.Lucas, B.L.Zhang, J.Wenker, D.A.Torchia
compound source
Molecule: Transforming Growth Factor-Beta 1
Chain: A, B
Synonym: Tgf-B1
Engineered: Yes
Other_details: 1 Mm (In Dimer), Ph 4.2
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Ovary
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
methodSolution NMR
related structures by homologous chain: 1KLC
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceTransforming growth factor beta 1: three-dimensional structure in solution and comparison with the X-ray structure of transforming growth factor beta 2., Hinck AP, Archer SJ, Qian SW, Roberts AB, Sporn MB, Weatherbee JA, Tsang ML, Lucas R, Zhang BL, Wenker J, Torchia DA, Biochemistry 1996 Jul 2;35(26):8517-34. PMID:8679613
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (949 Kb) [Save to disk]
  • Biological Unit Coordinates (1kld.pdb1.gz) 60 Kb
  • CSU: Contacts of Structural Units for 1KLD
  • Retrieve 1KLD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KLD from S2C, [Save to disk]
    • View 1KLD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1KLD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KLD, from MSDmotif at EBI
  • Genome occurence of 1KLD's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1klda_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1kldb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1kld_A] [1kld] [1kld_B]
  • SWISS-PROT database: [P01137]
  • Domain organization of [TGFB1_HUMAN] by SWISSPFAM
  • Domain found in 1KLD: [TGFB ] by SMART
    • Other resources with information on 1KLD
  • Community annotation for 1KLD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1KLD from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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