1KSB Relationship of Solution and Protein-Bound Structures of DNA Duplexes with the Major Intrastrand Cross-Link Lesions Formed on Cisplatin Binding to DNA date
authors Marzilli, L.G., Saad, J.S., Kuklenyik, Z., Keating, K.A., Xu, Y.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CPT enzyme
Primary referenceRelationship of solution and protein-bound structures of DNA duplexes with the major intrastrand cross-link lesions formed on cisplatin binding to DNA., Marzilli LG, Saad JS, Kuklenyik Z, Keating KA, Xu Y, J Am Chem Soc 2001 Mar 28;123(12):2764-70. PMID:11456962
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (13 Kb) [Save to disk]
  • Biological Unit Coordinates (1ksb.pdb1.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 1KSB
  • CSU: Contacts of Structural Units for 1KSB
  • Retrieve 1KSB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KSB from S2C, [Save to disk]
    • View 1KSB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1KSB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KSB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ksb] [1ksb_A] [1ksb_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1KSB
  • Community annotation for 1KSB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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