1KSE Dna date Jan 12, 2002
title Solution Structure Of A Quinolone-Capped Dna Duplex
authors J.Tuma, W.H.Connors, D.H.Stitelman, C.Richert
compound source
Molecule: 5'-D((5at)Pgpcpgpcpa)-3'
Chain: A, B
Engineered: Yes
Other_details: Quinolone-Dna Hybrid
 Synthetic: Yes
Other_details: Custom Synthesized By The Authors
methodSolution NMR
ligand 5AT, OXI enzyme
Primary referenceOn the effect of covalently appended quinolones on termini of DNA duplexes., Tuma J, Connors WH, Stitelman DH, Richert C, J Am Chem Soc 2002 Apr 24;124(16):4236-46. PMID:11960452
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (10 Kb) [Save to disk]
  • Biological Unit Coordinates (1kse.pdb1.gz) 7 Kb
  • LPC: Ligand-Protein Contacts for 1KSE
  • CSU: Contacts of Structural Units for 1KSE
  • Retrieve 1KSE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KSE from S2C, [Save to disk]
    • View 1KSE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1KSE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KSE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1kse_A] [1kse] [1kse_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1KSE
  • Community annotation for 1KSE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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