1KV4 Antibiotic date Jan 25, 2002
title Solution Structure Of Antibacterial Peptide (Moricin)
authors H.Hemmi, J.Ishibashi, S.Hara, M.Yamakawa
compound source
Molecule: Moricin
Chain: A
Engineered: Yes
Mutation: Yes
 Organism_scientific: Bombyx Mori
Organism_common: Domestic Silkworm
Organism_taxid: 7091
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pxa1
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of moricin, an antibacterial peptide, isolated from the silkworm Bombyx mori., Hemmi H, Ishibashi J, Hara S, Yamakawa M, FEBS Lett 2002 May 8;518(1-3):33-8. PMID:11997013
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (226 Kb) [Save to disk]
  • Biological Unit Coordinates (1kv4.pdb1.gz) 11 Kb
  • CSU: Contacts of Structural Units for 1KV4
  • Original NMR restraints for 1KV4 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1KV4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KV4 from S2C, [Save to disk]
    • View 1KV4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1KV4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KV4, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1kv4a_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1kv4] [1kv4_A]
  • SWISS-PROT database: [P82818]
  • Belongs to the membrane permeabilizing peptide, moricin (moricin) family according to TCDB.
  • Domain organization of [MOR1_BOMMO] by SWISSPFAM
    • Other resources with information on 1KV4
  • Community annotation for 1KV4 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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