1L0Q Protein Binding date Feb 12, 2002
title Tandem Yvtn Beta-Propeller And Pkd Domains From An Archaeal Layer Protein
authors H.Jing, J.Takagi, J.H.Liu, S.Lindgren, R.G.Zhang, A.Joachimiak, H.Wang, T.A.Springer
compound source
Molecule: Surface Layer Protein
Chain: A, B, C, D
Fragment: Yvtn Beta-Propeller Domain 1 And Pkd Domain 1
Engineered: Yes
 Organism_scientific: Methanosarcina Mazei
Organism_taxid: 213585
Strain: S-6
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: M15
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe-60
symmetry Space Group: C 1 2 1
R_factor 0.214 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
188.181 65.885 140.030 90.00 124.25 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand MSE, YCM enzyme
Primary referenceArchaeal surface layer proteins contain beta propeller, PKD, and beta helix domains and are related to metazoan cell surface proteins., Jing H, Takagi J, Liu JH, Lindgren S, Zhang RG, Joachimiak A, Wang JH, Springer TA, Structure (Camb) 2002 Oct;10(10):1453-64. PMID:12377130
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (264 Kb) [Save to disk]
  • Biological Unit Coordinates (1l0q.pdb1.gz) 68 Kb
  • Biological Unit Coordinates (1l0q.pdb2.gz) 69 Kb
  • Biological Unit Coordinates (1l0q.pdb3.gz) 68 Kb
  • Biological Unit Coordinates (1l0q.pdb4.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 1L0Q
  • CSU: Contacts of Structural Units for 1L0Q
  • Likely Quarternary Molecular Structure file(s) for 1L0Q
  • Structure Factors (459 Kb)
  • Retrieve 1L0Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1L0Q from S2C, [Save to disk]
  • Re-refined 1l0q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1L0Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1L0Q
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1L0Q, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1l0qa2, region A:1-301 [Jmol] [rasmolscript] [script source]
        - Domain d1l0qa1, region A:302-391 [Jmol] [rasmolscript] [script source]
        - Domain d1l0qb2, region B:1-301 [Jmol] [rasmolscript] [script source]
        - Domain d1l0qb1, region B:302-391 [Jmol] [rasmolscript] [script source]
        - Domain d1l0qc2, region C:1-301 [Jmol] [rasmolscript] [script source]
        - Domain d1l0qc1, region C:302-391 [Jmol] [rasmolscript] [script source]
        - Domain d1l0qd2, region D:1-301 [Jmol] [rasmolscript] [script source]
        - Domain d1l0qd1, region D:302-391 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1l0q] [1l0q_C] [1l0q_B] [1l0q_D] [1l0q_A]
  • SWISS-PROT database: [Q50245]
  • Domain organization of [Q50245_METMA] by SWISSPFAM
  • Domain found in 1L0Q: [PKD ] by SMART
    • Other resources with information on 1L0Q
  • Community annotation for 1L0Q at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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