1L3F	Hydrolase	date	Feb 26, 2002
title	Thermolysin In The Absence Of Substrate Has An Open Conforma
authors	A.C.Hausrath, B.W.Matthews
compound		source
Molecule: Thermolysin Chain: E Ec: 3.4.24.27		Organism_scientific: Bacillus Thermoproteolyticus Organism_taxid: 1427
symmetry	Space Group: P 41 21 2	R_factor 0.202 R_Free 0.302
crystal cell	length a length b length c angle alpha angle beta angle gamma 97.052 97.052 106.583 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	CA, ZN	enzyme	Hydrolase E.C.3.4.24.27 BRENDA
related structures	by homologous chain: 1ESP, 5TLN
Gene Ontology	Chain Function Process Component E
Primary reference	Thermolysin in the absence of substrate has an open conformation., Hausrath AC, Matthews BW, Acta Crystallogr D Biol Crystallogr 2002 Jun;58(Pt 6 Pt 2):1002-7. PMID:12037302

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk] Biological Unit Coordinates (1l3f.pdb1.gz) 52 Kb LPC: Ligand-Protein Contacts for 1L3F CSU: Contacts of Structural Units for 1L3F Likely Quarternary Molecular Structure file(s) for 1L3F Structure Factors (219 Kb) Retrieve 1L3F in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1L3F from S2C, [Save to disk] Re-refined 1l3f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1L3F in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1L3F

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1L3F, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1l3fe_, region E [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1l3f_E] [1l3f] SWISS-PROT database: [P00800] Domain organization of [THER_BACTH] by SWISSPFAM

Other resources with information on 1L3F

Community annotation for 1L3F at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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