1L7B Ligase date Mar 14, 2002
title Solution Nmr Structure Of Brct Domain Of T. Thermophilus: No Structural Genomics Consortium Target Wr64tt
authors G.Sahota, B.L.Dixon, Y.P.Huang, J.Aramini, D.Monleon, D.Bhattacha G.V.T.Swapna, C.Yin, R.Xiao, S.Anderson, R.Tejero, G.T.Montelion Northeast Structural Genomics Consortium (Nesg)
compound source
Molecule: Dna Ligase
Chain: A
Fragment: Brct Domain
Ec: 6.5.1.2
Engineered: Yes
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Gene: Dnlj
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21-De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
methodSolution NMR
ligand
enzyme Ligase E.C.6.5.1.2 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (244 Kb) [Save to disk]
  • Biological Unit Coordinates (1l7b.pdb1.gz) 24 Kb
  • CSU: Contacts of Structural Units for 1L7B
  • Original NMR restraints for 1L7B from PDB
  • Retrieve 1L7B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1L7B from S2C, [Save to disk]
    • View 1L7B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1L7B
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1L7B, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1l7ba_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1l7b_A] [1l7b]
  • SWISS-PROT database: [P26996]
  • Domain organization of [DNLJ_THET8] by SWISSPFAM
  • Domain found in 1L7B: [BRCT ] by SMART
    • Other resources with information on 1L7B
  • Community annotation for 1L7B at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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