1LBU Hydrolase date Mar 16, 1996
title Hydrolase Metallo (Zn) Dd-Peptidase
authors P.Charlier, J.P.Wery, O.Dideberg, J.M.Frere
compound source
Molecule: Muramoyl-Pentapeptide Carboxypeptidase
Chain: A
Ec: 3.4.17.8
 Organism_scientific: Streptomyces Albus
Organism_taxid: 1962
Strain: G
symmetry Space Group: P 1 21 1
R_factor 0.164 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.080 49.700 38.650 90.00 100.60 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand ZN enzyme Hydrolase E.C.3.4.17.8 BRENDA
note 1LBU is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (1lbu.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 1LBU
  • CSU: Contacts of Structural Units for 1LBU
  • Likely Quarternary Molecular Structure file(s) for 1LBU
  • Retrieve 1LBU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LBU from S2C, [Save to disk]
    • View 1LBU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1LBU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LBU, from MSDmotif at EBI
  • Genome occurence of 1LBU's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lbu_1, region 1-83 [Jmol] [rasmolscript] [script source]
        - Domain d1lbu_2, region 84-213 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lbu_A] [1lbu]
  • SWISS-PROT database: [P00733]
  • Domain organization of [CBPM_STRAL] by SWISSPFAM
    • Other resources with information on 1LBU
  • Community annotation for 1LBU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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