1LCB Transferase (Methyltransferase) date Jun 22, 1995
title Lactobacillus Casei Thymidylate Synthase Ternary Complex Wit H2folate
authors D.L.Birdsall, J.Finer-Moore, R.M.Stroud
compound source
Molecule: Thymidylate Synthase
Chain: A
Synonym: Ts, Lcts
Ec: 2.1.1.45
 Organism_scientific: Lactobacillus Casei
Organism_taxid: 1582
symmetry Space Group: P 61 2 2
R_factor 0.204 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.600 78.600 229.400 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand DHF, TMP BindingDB enzyme Transferase E.C.2.1.1.45 BRENDA
related structures by homologous chain: 1LCE, 1VZA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRefined structures of substrate-bound and phosphate-bound thymidylate synthase from Lactobacillus casei., Finer-Moore J, Fauman EB, Foster PG, Perry KM, Santi DV, Stroud RM, J Mol Biol 1993 Aug 20;232(4):1101-16. PMID:8371269
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (1lcb.pdb1.gz) 116 Kb
  • LPC: Ligand-Protein Contacts for 1LCB
  • CSU: Contacts of Structural Units for 1LCB
  • Likely Quarternary Molecular Structure file(s) for 1LCB
  • Structure Factors (57 Kb)
  • Retrieve 1LCB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LCB from S2C, [Save to disk]
  • Re-refined 1lcb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1LCB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1LCB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LCB, from MSDmotif at EBI
  • Genome occurence of 1LCB's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lcb__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lcb_A] [1lcb]
  • SWISS-PROT database: [P00469]
  • Domain organization of [TYSY_LACCA] by SWISSPFAM
    • Other resources with information on 1LCB
  • Community annotation for 1LCB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science