1LGY Hydrolase (Carboxylic Ester) date May 23, 1996
title Lipase II From Rhizopus Niveus
authors M.Kohno, J.Funatsu, B.Mikami, W.Kugimiya, T.Matsuo, Y.Morita
compound source
Molecule: Triacylglycerol Lipase
Chain: A, B, C
Synonym: Lipase
Ec: 3.1.1.3
 Organism_scientific: Rhizopus Niveus
Organism_taxid: 4844
Atcc: 4759
symmetry Space Group: P 43
R_factor 0.186 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.700 83.700 137.900 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand
enzyme Hydrolase E.C.3.1.1.3 BRENDA
related structures by homologous chain: 1TIC
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceThe crystal structure of lipase II from Rhizopus niveus at 2.2 A resolution., Kohno M, Funatsu J, Mikami B, Kugimiya W, Matsuo T, Morita Y, J Biochem (Tokyo) 1996 Sep;120(3):505-10. PMID:8902613
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (1lgy.pdb1.gz) 46 Kb
  • Biological Unit Coordinates (1lgy.pdb2.gz) 47 Kb
  • Biological Unit Coordinates (1lgy.pdb3.gz) 48 Kb
  • CSU: Contacts of Structural Units for 1LGY
  • Likely Quarternary Molecular Structure file(s) for 1LGY
  • Retrieve 1LGY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LGY from S2C, [Save to disk]
    • View 1LGY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1LGY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LGY, from MSDmotif at EBI
  • Genome occurence of 1LGY's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lgya_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1lgyb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1lgyc_, region C [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lgy_C] [1lgy] [1lgy_B] [1lgy_A]
  • SWISS-PROT database: [P61871]
  • Domain organization of [LIP_RHINI] by SWISSPFAM
    • Other resources with information on 1LGY
  • Community annotation for 1LGY at PDBWiki (http://pdbwiki.org)
  • LED, table of lipase structures from Lipase Engineering Database.
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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