1LP3	Virus	date	May 07, 2002
title	The Atomic Structure Of Adeno-Associated Virus (Aav-2), A Ve Human Gene Therapy
authors	Q.Xie, W.Bu, S.Bhatia, J.Hare, T.Somasundaram, A.Azzi, M.S.Chapman
compound		source
Molecule: Aav-2 Capsid Protein Chain: A Fragment: Residues 80-598 Synonym: Major Coat Protein Vp2 Engineered: Yes		Organism_scientific: Adeno-Associated Virus - 2 Organism_taxid: 10804 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hela Cells Expression_system_vector_type: Plasmid Expression_system_plasmid: Pav2
symmetry	Space Group: P 1	R_factor 0.338 R_Free 0.342
crystal cell	length a length b length c angle alpha angle beta angle gamma 249.690 249.690 644.760 90.00 101.16 120.00
method	X-Ray Diffraction	resolution	3.00 Å
Gene Ontology	Chain Function Process Component A
Primary reference	The atomic structure of adeno-associated virus (AAV-2), a vector for human gene therapy., Xie Q, Bu W, Bhatia S, Hare J, Somasundaram T, Azzi A, Chapman MS, Proc Natl Acad Sci U S A 2002 Aug 6;99(16):10405-10. PMID:12136130

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk] Biological Unit Coordinates (1lp3.pdb1.gz) 4802 Kb CSU: Contacts of Structural Units for 1LP3 Likely Quarternary Molecular Structure file(s) for 1LP3 Structure Factors (36428 Kb) Retrieve 1LP3 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1LP3 from S2C, [Save to disk] Re-refined 1lp3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1LP3 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1LP3

VIPERdb: visual, structural and computational analysis of 1LP3 Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1LP3, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1lp3a_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1lp3] [1lp3_A] SWISS-PROT database: [P03135] Domain organization of [COA3_AAV2] by SWISSPFAM

Other resources with information on 1LP3

Community annotation for 1LP3 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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