1LQY	Hydrolase	date	May 14, 2002
title	Crystal Structure Of Bacillus Stearothermophilus Peptide Def Complexed With Antibiotic Actinonin
authors	M.Mathieu, V.Mikol
compound		source
Molecule: Peptide Deformylase 2 Chain: A Synonym: Pdf 2, Polypeptide Deformylase 2 Ec: 3.5.1.88 Engineered: Yes		Organism_scientific: Geobacillus Stearothermophilus Organism_taxid: 1422 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.161 R_Free 0.242
crystal cell	length a length b length c angle alpha angle beta angle gamma 42.013 43.075 92.225 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	BB2, NI	enzyme	Hydrolase E.C.3.5.1.88 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	The crystal structures of four peptide deformylases bound to the antibiotic actinonin reveal two distinct types: a platform for the structure-based design of antibacterial agents., Guilloteau JP, Mathieu M, Giglione C, Blanc V, Dupuy A, Chevrier M, Gil P, Famechon A, Meinnel T, Mikol V, J Mol Biol 2002 Jul 26;320(5):951-62. PMID:12126617

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk] Biological Unit Coordinates (1lqy.pdb1.gz) 35 Kb LPC: Ligand-Protein Contacts for 1LQY CSU: Contacts of Structural Units for 1LQY Likely Quarternary Molecular Structure file(s) for 1LQY Retrieve 1LQY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1LQY from S2C, [Save to disk]

View 1LQY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1LQY

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1LQY, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1lqya_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1lqy_A] [1lqy] SWISS-PROT database: [O31410] Domain organization of [DEF2_BACST] by SWISSPFAM

Other resources with information on 1LQY

Community annotation for 1LQY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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