1LYP Lipopolysaccharide-Binding Protein date Jan 12, 1995
title The Solution Structure Of The Active Domain Of Cap18: A Lipopolysaccharide Binding Protein From Rabbit Leukocytes
authors C.Chen, T.H.Huang
compound source
Molecule: Cap18
Chain: A
Engineered: Yes
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe solution structure of the active domain of CAP18--a lipopolysaccharide binding protein from rabbit leukocytes., Chen C, Brock R, Luh F, Chou PJ, Larrick JW, Huang RF, Huang TH, FEBS Lett 1995 Aug 14;370(1-2):46-52. PMID:7649303
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (12 Kb) [Save to disk]
  • Biological Unit Coordinates (1lyp.pdb1.gz) 10 Kb
  • CSU: Contacts of Structural Units for 1LYP
  • Original NMR restraints for 1LYP from PDB
  • Retrieve 1LYP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LYP from S2C, [Save to disk]
  • View 1LYP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LYP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LYP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lyp__, region [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lyp_A] [1lyp]
  • SWISS-PROT database: [P25230]
  • Belongs to the cathelicidin (cathelicidin) family according to TCDB.
  • Domain organization of [CAP18_RABIT] by SWISSPFAM
  • Other resources with information on 1LYP
  • Community annotation for 1LYP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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