1M6F Strong Binding in the DNA Minor Groove by an Aromatic Diamidine With a Shape That Does Not Match the Curvature of the Groove date
authors Nguyen, B., Lee, M.P.H., Hamelberg, D., Joubert, A., Bailly, C., Brun, R., Neidle, S., Wilson, W.D.
compound source
symmetry
R_factor
R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.78
ligand CGQ, MG enzyme
Primary referenceStrong binding in the DNA minor groove by an aromatic diamidine with a shape that does not match the curvature of the groove., Nguyen B, Lee MP, Hamelberg D, Joubert A, Bailly C, Brun R, Neidle S, Wilson WD, J Am Chem Soc 2002 Nov 20;124(46):13680-1. PMID:12431090
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (1m6f.pdb1.gz) 13 Kb
  • LPC: Ligand-Protein Contacts for 1M6F
  • CSU: Contacts of Structural Units for 1M6F
  • Likely Quarternary Molecular Structure file(s) for 1M6F
  • Structure Factors (61 Kb)
  • Retrieve 1M6F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1M6F from S2C, [Save to disk]
  • Re-refined 1m6f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1M6F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1M6F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1M6F, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1m6f_B] [1m6f] [1m6f_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1M6F
  • Community annotation for 1M6F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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  • Images from IMB Jena Image Library of Biological Macromolecules.

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