1MBI Oxygen Storage date Jun 25, 1990
title X-Ray Crystal Structure Of The Ferric Sperm Whale Myoglobin: Complex At 2.0 Angstroms Resolution
authors C.Lionetti, M.G.Guanziroli, F.Frigerio, P.Ascenzi, M.Bolognesi
compound source
Molecule: Myoglobin
Chain: A
Engineered: Yes
 Organism_scientific: Physeter Catodon
Organism_common: Sperm Whale
Organism_taxid: 9755
symmetry Space Group: P 1 21 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.900 30.760 34.860 90.00 105.67 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand HEM, IMD, SO4 enzyme
related structures by homologous chain: 1CH3, 2MGI
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceX-ray crystal structure of the ferric sperm whale myoglobin: imidazole complex at 2.0 A resolution., Lionetti C, Guanziroli MG, Frigerio F, Ascenzi P, Bolognesi M, J Mol Biol 1991 Feb 5;217(3):409-12. PMID:1994031
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (1mbi.pdb1.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 1MBI
  • CSU: Contacts of Structural Units for 1MBI
  • Likely Quarternary Molecular Structure file(s) for 1MBI
  • Structure Factors (51 Kb)
  • Retrieve 1MBI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MBI from S2C, [Save to disk]
  • Re-refined 1mbi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1MBI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1MBI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MBI, from MSDmotif at EBI
  • Genome occurence of 1MBI's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1mbi__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1mbi_A] [1mbi]
  • SWISS-PROT database: [P02185]
  • Domain organization of [MYG_PHYCA] by SWISSPFAM
    • Other resources with information on 1MBI
  • Community annotation for 1MBI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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