1MLY	Transferase	date	Sep 02, 2002
title	Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase In With The Cis Isomer Of Amiclenomycin
authors	J.Sandmark, S.Mann, A.Marquet, G.Schneider
compound		source
Molecule: 7,8-Diamino-Pelargonic Acid Aminotransferase Chain: A, B Synonym: Adenosylmethionine-8-Amino-7-Oxononanoate Aminotra Dapa Aminotransferase; Ec: 2.6.1.62 Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Gene: Bioa Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet24
symmetry	Space Group: C 1 2 1	R_factor 0.194 R_Free 0.220
crystal cell	length a length b length c angle alpha angle beta angle gamma 128.655 56.073 116.174 90.00 109.86 90.00
method	X-Ray Diffraction	resolution	1.81 Å
ligand	ACZ, NA, PLP	enzyme	Transferase E.C.2.6.1.62 BRENDA
related structures	by homologous chain: 1QJ5, 1S09
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural basis for the inhibition of the biosynthesis of biotin by the antibiotic amiclenomycin., Sandmark J, Mann S, Marquet A, Schneider G, J Biol Chem 2002 Nov 8;277(45):43352-8. Epub 2002 Sep 5. PMID:12218056

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk] Biological Unit Coordinates (1mly.pdb1.gz) 142 Kb LPC: Ligand-Protein Contacts for 1MLY CSU: Contacts of Structural Units for 1MLY Likely Quarternary Molecular Structure file(s) for 1MLY Structure Factors (620 Kb) Retrieve 1MLY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1MLY from S2C, [Save to disk] Re-refined 1mly structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 1MLY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1MLY, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1mlya_, region A [Jmol] [rasmolscript] [script source]     - Domain d1mlyb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1mly_A] [1mly_B] [1mly] SWISS-PROT database: [P12995] Domain organization of [BIOA_ECOLI] by SWISSPFAM

Other resources with information on 1MLY

Community annotation for 1MLY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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