1MOJ Dna Binding Protein date Sep 09, 2002
title Crystal Structure Of An Archaeal Dps-Homologue From Halobact Salinarum
authors K.Zeth, S.Offermann, L.O.Essen, D.Oesterhelt
compound source
Molecule: Dps-Like Ferritin
Chain: A, B, C, D
Synonym: Starvation Induced Dna Binding Protein, Dpsa
 Organism_scientific: Halobacterium Salinarum
Organism_taxid: 2242
Strain: Tom
symmetry Space Group: P 3 2 1
R_factor 0.147 R_Free 0.182
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.747 90.747 149.410 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand FE, MG, NA enzyme
related structures by homologous chain: 1TJO, 1TK6
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceIron-oxo clusters biomineralizing on protein surfaces: structural analysis of Halobacterium salinarum DpsA in its low- and high-iron states., Zeth K, Offermann S, Essen LO, Oesterhelt D, Proc Natl Acad Sci U S A 2004 Sep 21;101(38):13780-5. Epub 2004 Sep 13. PMID:15365182
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (119 Kb) [Save to disk]
  • Biological Unit Coordinates (1moj.pdb1.gz) 335 Kb
  • LPC: Ligand-Protein Contacts for 1MOJ
  • CSU: Contacts of Structural Units for 1MOJ
  • Likely Quarternary Molecular Structure file(s) for 1MOJ
  • Structure Factors (516 Kb)
  • Retrieve 1MOJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1MOJ from S2C, [Save to disk]
  • Re-refined 1moj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1MOJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1MOJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1MOJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1moja_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1mojb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1mojc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1mojd_, region D [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1moj_C] [1moj] [1moj_D] [1moj_A] [1moj_B]
  • SWISS-PROT database: [Q9HMP7]
  • Domain organization of [DPS_HALSA] by SWISSPFAM
    • Other resources with information on 1MOJ
  • Community annotation for 1MOJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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