1MUE	Hydrolase Inhibitor	date	Sep 23, 2002
title	Thrombin-Hirugen-L405,426
authors	C.S.Burgey, K.A.Robinson, T.A.Lyle, P.G.Nantermet, H.G.Selnick, R.C.Isaacs, S.D.Lewis, B.J.Lucas, J.A.Krueger, R.Singh, C.Miller R.B.White, B.Wong, E.A.Lyle, M.T.Stranieri, J.J.Cook, D.R.Mcmast J.M.Pellicore, S.Pal, A.A.Wallace, F.C.Clayton, D.Bohn, D.C.Wels J.J.Lynch, Y.Yan, Z.Chen, L.Kuo, S.J.Gardell, J.A.Shafer, J.P.Vac
compound		source
Molecule: Thrombin Chain: A Fragment: Light Chain Synonym: Coagulation Factor II Ec: 3.4.21.5		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Tissue: Plasma
Molecule: Thrombin Chain: B Fragment: Heavy Chain Synonym: Coagulation Factor II Ec: 3.4.21.5		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Tissue: Plasma
Molecule: Hirudin Iib Chain: C Engineered: Yes		Synthetic: Yes Organism_scientific: Hirudo Medicinalis Organism_taxid: 6421 Other_details: This Peptide Was Chemically Synthesized. It Naturally Found In Hirudo Medicinalis (Medicinal Leech).
symmetry	Space Group: C 1 2 1	R_factor 0.201 R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.010 72.110 72.840 90.00 100.66 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	CDD, TYS BindingDB	enzyme	Hydrolase E.C.3.4.21.5 BRENDA
related structures	by homologous chain: 1AD8, 1Z8I
Gene Ontology	Chain Function Process Component A B
Primary reference	Pharmacokinetic optimization of 3-amino-6-chloropyrazinone acetamide thrombin inhibitors. Implementation of P3 pyridine N-oxides to deliver an orally bioavailable series containing P1 N-benzylamides., Burgey CS, Robinson KA, Lyle TA, Nantermet PG, Selnick HG, Isaacs RC, Lewis SD, Lucas BJ, Krueger JA, Singh R, Miller-Stein C, White RB, Wong B, Lyle EA, Stranieri MT, Cook JJ, McMasters DR, Pellicore JM, Pal S, Wallace AA, Clayton FC, Bohn D, Welsh DC, Lynch JJ Jr, Yan Y, Chen Z, Kuo L, Gardell SJ, Shafer JA, Vacca JP, Bioorg Med Chem Lett 2003 Apr 7;13(7):1353-7. PMID:12657281

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (1mue.pdb1.gz) 52 Kb LPC: Ligand-Protein Contacts for 1MUE CSU: Contacts of Structural Units for 1MUE Likely Quarternary Molecular Structure file(s) for 1MUE Retrieve 1MUE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1MUE from S2C, [Save to disk]

View 1MUE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1MUE

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1MUE, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1mue.1, region A:,B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1mue_C] [1mue_A] [1mue_B] [1mue] SWISS-PROT database: [P28506] [P00734] Domain organization of [HIR2B_HIRME] [THRB_HUMAN] by SWISSPFAM Domain found in 1MUE: [Tryp_SPc ] by SMART

Other resources with information on 1MUE

Community annotation for 1MUE at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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