1N2W Dna date Oct 24, 2002
title Solution Structure Of 8og:G Mismatch Containing Duplex
authors V.Thiviyanathan, A.D.Somasunderam, T.K.Hazra, S.Mitra, D.G.Goren
compound source
Molecule: 5'-D(Cpgpcpgpapaptptp(8og)Pgpcpg)-3'
Chain: A, B
Engineered: Yes
 Synthetic: Yes
Other_details: Eco Ri Sequence
methodSolution NMR
ligand 8OG enzyme
Primary referenceSolution structure of a DNA duplex containing 8-hydroxy-2'-deoxyguanosine opposite deoxyguanosine., Thiviyanathan V, Somasunderam A, Hazra TK, Mitra S, Gorenstein DG, J Mol Biol 2003 Jan 17;325(3):433-42. PMID:12498794
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (1n2w.pdb1.gz) 13 Kb
  • LPC: Ligand-Protein Contacts for 1N2W
  • CSU: Contacts of Structural Units for 1N2W
  • Retrieve 1N2W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1N2W from S2C, [Save to disk]
    • View 1N2W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1N2W
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1N2W, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1n2w_B] [1n2w_A] [1n2w]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1N2W
  • Community annotation for 1N2W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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