1N62	Oxidoreductase	date	Nov 08, 2002
title	Crystal Structure Of The Mo,Cu-Co Dehydrogenase (Codh), N- Butylisocyanide-Bound State
authors	H.Dobbek, L.Gremer, R.Kiefersauer, R.Huber, O.Meyer
compound		source
Molecule: Carbon Monoxide Dehydrogenase Small Chain Chain: A, D Synonym: Co Dehydrogenase Subunit S Ec: 1.2.99.2		Organism_scientific: Oligotropha Carboxidovorans Organism_taxid: 504832 Strain: Om5
Molecule: Carbon Monoxide Dehydrogenase Large Chain Chain: B, E Synonym: Co Dehydrogenase Subunit L Ec: 1.2.99.2		Organism_scientific: Oligotropha Carboxidovorans Organism_taxid: 504832 Strain: Om5
Molecule: Carbon Monoxide Dehydrogenase Medium Chain Chain: C, F Synonym: Co Dehydrogenase Subunit M Ec: 1.2.99.2		Organism_scientific: Oligotropha Carboxidovorans Organism_taxid: 504832 Strain: Om5
symmetry	Space Group: P 21 21 21	R_factor 0.144 R_Free 0.172
crystal cell	length a length b length c angle alpha angle beta angle gamma 117.860 130.019 156.231 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.09 Å
ligand	CUB, FAD, FES, MCN, PO4	enzyme	Oxidoreductase E.C.1.2.99.2 BRENDA
note	1N62 is a representative structure
related structures	by homologous chain: 1N60
Gene Ontology	Chain Function Process Component A, D electron transfer activity E, B F, C
Primary reference	Catalysis at a dinuclear [CuSMo(==O)OH] cluster in a CO dehydrogenase resolved at 1.1-A resolution., Dobbek H, Gremer L, Kiefersauer R, Huber R, Meyer O, Proc Natl Acad Sci U S A 2002 Dec 10;99(25):15971-6. PMID:12475995

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (894 Kb) [Save to disk] Biological Unit Coordinates (1n62.pdb1.gz) 883 Kb LPC: Ligand-Protein Contacts for 1N62 CSU: Contacts of Structural Units for 1N62 Likely Quarternary Molecular Structure file(s) for 1N62 Retrieve 1N62 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1N62 from S2C, [Save to disk]

View 1N62 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1N62

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1N62 1N62A 1N62B 1N62C 1N62D 1N62E 1N62F from the CEP Server. Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1N62, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1n62a2, region A:3-81 [Jmol] [rasmolscript] [script source]     - Domain d1n62a1, region A:82-163 [Jmol] [rasmolscript] [script source]     - Domain d1n62b2, region B:147-809 [Jmol] [rasmolscript] [script source]     - Domain d1n62b1, region B:6-146 [Jmol] [rasmolscript] [script source]     - Domain d1n62c2, region C:1-177 [Jmol] [rasmolscript] [script source]     - Domain d1n62c1, region C:178-286 [Jmol] [rasmolscript] [script source]     - Domain d1n62d2, region D:2-81 [Jmol] [rasmolscript] [script source]     - Domain d1n62d1, region D:82-160 [Jmol] [rasmolscript] [script source]     - Domain d1n62e1, region E:14-146 [Jmol] [rasmolscript] [script source]     - Domain d1n62e2, region E:147-809 [Jmol] [rasmolscript] [script source]     - Domain d1n62f2, region F:1-177 [Jmol] [rasmolscript] [script source]     - Domain d1n62f1, region F:178-286 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1n62] [1n62_B] [1n62_A] [1n62_D] [1n62_C] [1n62_E] [1n62_F] SWISS-PROT database: [P19919] [P19920] [P19921] Domain organization of [DCML_OLICO] [DCMM_OLICO] [DCMS_OLICO] by SWISSPFAM Domains found in 1N62: [Ald_Xan_dh_C] [CO_deh_flav_C ] by SMART

Other resources with information on 1N62

Community annotation for 1N62 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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