1NF9	Hydrolase	date	Dec 13, 2002
title	Crystal Structure Of Phzd Protein From Pseudomonas Aeruginos
authors	F.Parsons, K.Calabrese, E.Eisenstein, J.E.Ladner
compound		source
Molecule: Phenazine Biosynthesis Protein Phzd Chain: A Synonym: Phzd Isochorismatase Ec: 3.3.2.1 Engineered: Yes		Organism_scientific: Pseudomonas Aeruginosa Organism_taxid: 287 Gene: Phzd Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl-21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: C 2 2 21	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 68.850 77.030 82.550 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	BOG, FMT	enzyme	Hydrolase E.C.3.3.2.1 BRENDA
related structures	by homologous chain: 1NF8
Gene Ontology	Chain Function Process Component A
Primary reference	Structure and Mechanism of Pseudomonas aeruginosa PhzD, an Isochorismatase from the Phenazine Biosynthetic Pathway(,)(,)., Parsons JF, Calabrese K, Eisenstein E, Ladner JE, Biochemistry 2003 May 20;42(19):5684-5693. PMID:12741825

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk] Biological Unit Coordinates (1nf9.pdb1.gz) 156 Kb LPC: Ligand-Protein Contacts for 1NF9 CSU: Contacts of Structural Units for 1NF9 Likely Quarternary Molecular Structure file(s) for 1NF9 Structure Factors (304 Kb) Retrieve 1NF9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1NF9 from S2C, [Save to disk] Re-refined 1nf9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1NF9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1NF9

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1NF9 from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1NF9, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1nf9a_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1nf9_A] [1nf9] SWISS-PROT database: [Q7DC80] Domain organization of [Q7DC80_PSEAE] by SWISSPFAM

Other resources with information on 1NF9

Community annotation for 1NF9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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