1NYG	Phosphotransferase	date	Apr 22, 1996
title	Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene Tyrosine Family Of 20 Structures
authors	C.J.Morton, D.J.R.Pugh, I.D.Campbell
compound		source
Molecule: Fyn Chain: A Fragment: Sh3 Domain, Residues 82 - 148 Ec: 2.7.1.112 Engineered: Yes Mutation: Yes Other_details: N-Terminal Gs From Expression System		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Bl21 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_plasmid: Pgex
method	Solution NMR
ligand		enzyme	Transferase E.C.2.7.1.112 BRENDA
Primary reference	Solution structure and peptide binding of the SH3 domain from human Fyn., Morton CJ, Pugh DJ, Brown EL, Kahmann JD, Renzoni DA, Campbell ID, Structure 1996 Jun 15;4(6):705-14. PMID:8805554

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (303 Kb) [Save to disk] Biological Unit Coordinates (1nyg.pdb1.gz) 15 Kb CSU: Contacts of Structural Units for 1NYG Retrieve 1NYG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1NYG from S2C, [Save to disk]

View 1NYG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1NYG

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1NYG, from MSDmotif at EBI Genome occurence of 1NYG's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1nyg__, region [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1nyg_A] [1nyg] SWISS-PROT database: [P06241] Domain organization of [FYN_HUMAN] by SWISSPFAM Domain found in 1NYG: [SH3 ] by SMART

Other resources with information on 1NYG

Community annotation for 1NYG at PDBWiki (http://pdbwiki.org) NMR Ensemble (OLDERADO: core, domain and representative structure database) MMDB (Entrez's Structure Database)

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