1O1Y Crystal structure of a glutamine amidotransferase (tm1158) from thermotoga maritima at 1.70 A resolution date
authors JCSG, Joint.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.17242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.70
ligand MSE, OCS, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of a putative glutamine amido transferase (TM1158) from Thermotoga maritima at 1.7 A resolution., Schwarzenbacher R, Deacon AM, Jaroszewski L, Brinen LS, Canaves JM, Dai X, Elsliger MA, Floyd R, Godzik A, Grittini C, Grzechnik SK, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, McMullan D, McPhillips TM, Miller MD, Morse A, Moy K, Nelson MS, Ouyang J, Page R, Robb A, Quijano K, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, von Delft F, Wang X, West B, Wolf G, Hodgson KO, Wooley J, Wilson IA, Proteins 2004 Mar 1;54(4):801-5. PMID:14997577
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (1o1y.pdb1.gz) 48 Kb
  • Biological Unit Coordinates (1o1y.pdb2.gz) 93 Kb
  • Biological Unit Coordinates (1o1y.pdb3.gz) 93 Kb
  • LPC: Ligand-Protein Contacts for 1O1Y
  • CSU: Contacts of Structural Units for 1O1Y
  • Likely Quarternary Molecular Structure file(s) for 1O1Y
  • Structure Factors (277 Kb)
  • Retrieve 1O1Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1O1Y from S2C, [Save to disk]
  • Re-refined 1o1y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1O1Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1O1Y
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1O1Y, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1o1ya_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1o1y] [1o1y_A]
  • SWISS-PROT database: [Q9X0P2]
  • Domain organization of [Q9X0P2_THEMA] by SWISSPFAM
    • Other resources with information on 1O1Y
  • Community annotation for 1O1Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science