1O62 Structural Genomics, Unknown Function date Oct 23, 2003
title Crystal Structure Of The Apo Form Of A Plp-Dependent Enzyme
authors Structural Genomix
compound source
Molecule: Aminotransferase
Chain: A, B
Engineered: Yes
 Organism_scientific: Campylobacter Jejuni
Organism_taxid: 197
Gene: Tm0572
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65
R_factor 0.224 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
152.189 152.189 77.119 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand ACT, BME enzyme
related structures by homologous chain: 1O61
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural analysis of a set of proteins resulting from a bacterial genomics project., Badger J, Sauder JM, Adams JM, Antonysamy S, Bain K, Bergseid MG, Buchanan SG, Buchanan MD, Batiyenko Y, Christopher JA, Emtage S, Eroshkina A, Feil I, Furlong EB, Gajiwala KS, Gao X, He D, Hendle J, Huber A, Hoda K, Kearins P, Kissinger C, Laubert B, Lewis HA, Lin J, Loomis K, Lorimer D, Louie G, Maletic M, Marsh CD, Miller I, Molinari J, Muller-Dieckmann HJ, Newman JM, Noland BW, Pagarigan B, Park F, Peat TS, Post KW, Radojicic S, Ramos A, Romero R, Rutter ME, Sanderson WE, Schwinn KD, Tresser J, Winhoven J, Wright TA, Wu L, Xu J, Harris TJ, Proteins 2005 Sep 1;60(4):787-96. PMID:16021622
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk]
  • Biological Unit Coordinates (1o62.pdb1.gz) 125 Kb
  • LPC: Ligand-Protein Contacts for 1O62
  • CSU: Contacts of Structural Units for 1O62
  • Likely Quarternary Molecular Structure file(s) for 1O62
  • Structure Factors (501 Kb)
  • Retrieve 1O62 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1O62 from S2C, [Save to disk]
  • Re-refined 1o62 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1O62 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1O62
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1O62, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1o62a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1o62b_, region B [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1o62] [1o62_B] [1o62_A]
  • SWISS-PROT database: [Q9S5Y7]
  • Domain organization of [Q9S5Y7_CAMJE] by SWISSPFAM
    • Other resources with information on 1O62
  • Community annotation for 1O62 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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