1OF8	Lyase	date	Apr 08, 2003
title	Double Complex Of The Tyrosine Sensitive Dahp Synthase From Cerevisiae With Co2+, Pep And The E4p Analogoue G3p
authors	V.Koenig, A.Pfeil, G.Heinrich, G.H.Braus, T.R.Schneider
compound		source
Molecule: Phospho-2-Dehydro-3-Deoxyheptonate Aldolase, Tyro Inhibited; Chain: A, B Synonym: Phospho-2-Keto-3-Deoxyheptonate Aldolase Dahp Synt Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase, Phospho Dehydro- 3-Deoxyheptonate Aldolase; Ec: 4.1.2.15 Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Strain: Rh1326 Expression_system: Saccharomyces Cerevisiae Expression_system_taxid: 4932
symmetry	Space Group: C 1 2 1	R_factor 0.125 R_Free 0.167
crystal cell	length a length b length c angle alpha angle beta angle gamma 196.462 50.788 64.700 90.00 106.39 90.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	CO, G3P, GOL, PEP	enzyme	Lyase E.C.4.1.2.15 BRENDA
note	1OF8 is a representative structure
related structures	by homologous chain: 1OFO
Gene Ontology	Chain Function Process Component A, B
Primary reference	Substrate and metal complexes of 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase from Saccharomyces cerevisiae provide new insights into the catalytic mechanism., Konig V, Pfeil A, Braus GH, Schneider TR, J Mol Biol. 2004 Mar 26;337(3):675-90. PMID:15019786

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (238 Kb) [Save to disk] Biological Unit Coordinates (1of8.pdb1.gz) 232 Kb LPC: Ligand-Protein Contacts for 1OF8 CSU: Contacts of Structural Units for 1OF8 Likely Quarternary Molecular Structure file(s) for 1OF8 Structure Factors (1305 Kb) Retrieve 1OF8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1OF8 from S2C, [Save to disk] Re-refined 1of8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1OF8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1OF8

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1OF8 1OF8A 1OF8B from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1OF8, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1of8a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1of8b_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1of8_B] [1of8_A] [1of8] SWISS-PROT database: [P32449] Domain organization of [AROG_YEAST] by SWISSPFAM

Other resources with information on 1OF8

Community annotation for 1OF8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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