1OF9 Toxin date Apr 09, 2003
title Solution Structure Of The Pore Forming Toxin Of Entamoeba Histolytica (Amoebapore A)
authors O.Hecht, K.Schleinkofer, H.Bruhn, M.Leippe, N.Van Nuland, A.J.Dingley, J.Grotzinger
compound source
Molecule: Pore-Forming Peptide Ameobapore A
Chain: A
Synonym: Amoebapore A, Eh-App
 Organism_scientific: Entamoeba Histolytica
Organism_taxid: 5759
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the pore-forming protein of Entamoeba histolytica., Hecht O, Van Nuland NA, Schleinkofer K, Dingley AJ, Bruhn H, Leippe M, Grotzinger J, J Biol Chem. 2004 Apr 23;279(17):17834-41. Epub 2004 Feb 17. PMID:14970207
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (190 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1OF9
  • Retrieve 1OF9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OF9 from S2C, [Save to disk]
    • View 1OF9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1OF9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OF9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1of9a_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1of9_A] [1of9]
  • SWISS-PROT database: [P34095]
  • Belongs to the amoebapore (amoebapore) family according to TCDB.
  • Domain organization of [PFPA_ENTHI] by SWISSPFAM
  • Domain found in 1OF9: [SapB ] by SMART
    • Other resources with information on 1OF9
  • Community annotation for 1OF9 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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