1OHH Synthase date May 27, 2003
title Bovine Mitochondrial F1-Atpase Complexed With The Inhibitor If1
authors E.Cabezon, M.G.Montgomery, A.G.W.Leslie, J.E.Walker
compound source
Molecule: Atp Synthase Subunit Alpha, Mitochondrial
Chain: A, B, C
 Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart
Tissue: Muscle

Molecule: Atp Synthase Subunit Beta, Mitochondrial
Chain: D, E, F
Ec: 3.6.3.14
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart
Tissue: Muscle

Molecule: Atp Synthase Subunit Gamma, Mitochondrial
Chain: G
Synonym: F-Atpase Gamma Subunit
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart
Tissue: Muscle

Molecule: Atpase Inhibitor, Mitochondrial
Chain: H
Synonym: Inhibitor Of F(1)F(O)-Atpase,If1
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Heart
Tissue: Muscle
Gene: Atpif1, Atpi
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: C41
symmetry Space Group: P 21 21 21
R_factor 0.232 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
272.300 107.200 152.400 90.00 90.00 90.00
method X-Ray Diffraction, 2 Modelsresolution 2.80 Å
ligand ANP, MG enzyme Hydrolase E.C.3.6.3.14 BRENDA
related structures by homologous chain: 1BMF, 1GMJ, 1MAB
Gene
Ontology
ChainFunctionProcessComponent
A, B, C


F, E, D


G


H


Primary referenceThe structure of bovine F1-ATPase in complex with its regulatory protein IF1., Cabezon E, Montgomery MG, Leslie AG, Walker JE, Nat Struct Biol. 2003 Sep;10(9):744-50. Epub 2003 Aug 17. PMID:12923572
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (910 Kb) [Save to disk]
  • Biological Unit Coordinates (1ohh.pdb1.gz) 454 Kb
  • LPC: Ligand-Protein Contacts for 1OHH
  • CSU: Contacts of Structural Units for 1OHH
  • Likely Quarternary Molecular Structure file(s) for 1OHH
  • Structure Factors (841 Kb)
  • Retrieve 1OHH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OHH from S2C, [Save to disk]
    • View 1OHH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1OHH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ohha2, region A:24-94 [Jmol] [rasmolscript] [script source]
        - Domain d1ohha1, region A:380-510 [Jmol] [rasmolscript] [script source]
        - Domain d1ohha3, region A:95-379 [Jmol] [rasmolscript] [script source]
        - Domain d1ohhb2, region B:24-94 [Jmol] [rasmolscript] [script source]
        - Domain d1ohhb1, region B:380-510 [Jmol] [rasmolscript] [script source]
        - Domain d1ohhb3, region B:95-379 [Jmol] [rasmolscript] [script source]
        - Domain d1ohhc2, region C:19-94 [Jmol] [rasmolscript] [script source]
        - Domain d1ohhc1, region C:380-510 [Jmol] [rasmolscript] [script source]
        - Domain d1ohhc3, region C:95-379 [Jmol] [rasmolscript] [script source]
        - Domain d1ohhd1, region D:358-477 [Jmol] [rasmolscript] [script source]
        - Domain d1ohhd3, region D:82-357 [Jmol] [rasmolscript] [script source]
        - Domain d1ohhd2, region D:9-81 [Jmol] [rasmolscript] [script source]
        - Domain d1ohhe1, region E:358-474 [Jmol] [rasmolscript] [script source]
        - Domain d1ohhe3, region E:82-357 [Jmol] [rasmolscript] [script source]
        - Domain d1ohhe2, region E:9-81 [Jmol] [rasmolscript] [script source]
        - Domain d1ohhf1, region F:358-474 [Jmol] [rasmolscript] [script source]
        - Domain d1ohhf3, region F:82-357 [Jmol] [rasmolscript] [script source]
        - Domain d1ohhf2, region F:9-81 [Jmol] [rasmolscript] [script source]
        - Domain d1ohhg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1ohhh_, region H [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ohh_B] [1ohh_E] [1ohh] [1ohh_C] [1ohh_G] [1ohh_H] [1ohh_D] [1ohh_F] [1ohh_A]
  • SWISS-PROT database: [P01096] [P19483] [P00829] [P05631]
  • Domain organization of [ATIF1_BOVIN] [ATPA_BOVIN] [ATPB_BOVIN] [ATPG_BOVIN] by SWISSPFAM
  • Domain found in 1OHH: [AAA ] by SMART
    • Other resources with information on 1OHH
  • Community annotation for 1OHH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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