1OMK The Crystal Structure of d(CACG(5IU)G) date
authors Schuerman, G., Hecke, K.Van., Meervelt, L.Van.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.30
ligand 5IU, NCO enzyme
Primary referenceExploration of the influence of 5-iodo-2'-deoxyuridine incorporation on the structure of d[CACG(IDU)G]., Schuerman G, Van Hecke K, Van Meervelt L, Acta Crystallogr D Biol Crystallogr 2003 Aug;59(Pt 8):1525-8. PMID:12876373
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (10 Kb) [Save to disk]
  • Biological Unit Coordinates (1omk.pdb1.gz) 6 Kb
  • LPC: Ligand-Protein Contacts for 1OMK
  • CSU: Contacts of Structural Units for 1OMK
  • Likely Quarternary Molecular Structure file(s) for 1OMK
  • Structure Factors (98 Kb)
  • Retrieve 1OMK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OMK from S2C, [Save to disk]
  • Re-refined 1omk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1OMK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OMK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OMK, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1omk_B] [1omk_A] [1omk]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1OMK
  • Community annotation for 1OMK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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