1OMQ Dna Binding Protein date Feb 26, 2003
title Structure Of Penetratin In Bicellar Solution
authors M.Lindberg, H.Biverstahl, A.Graslund, L.Maler
compound source
Molecule: Homeotic Antennapedia Protein
Chain: A
Fragment: C-Terminal Fragment
Synonym: Penetratin
Engineered: Yes
 Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized. The Of The Peptide Is Naturally Found In Drosophila Melanogaste Fly). The Peptide Was Obtained From Neosystem Inc. And Used Further Purification.
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and positioning comparison of two variants of penetratin in two different membrane mimicking systems by NMR., Lindberg M, Biverstahl H, Graslund A, Maler L, Eur J Biochem 2003 Jul;270(14):3055-63. PMID:12846839
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (1omq.pdb1.gz) 6 Kb
  • CSU: Contacts of Structural Units for 1OMQ
  • Original NMR restraints for 1OMQ from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1OMQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OMQ from S2C, [Save to disk]
    • View 1OMQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1OMQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OMQ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1omqa_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1omq_A] [1omq]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1OMQ
  • Community annotation for 1OMQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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