1OSN Transferase date Mar 20, 2003
title Crystal Structure Of Varicella Zoster Virus Thymidine Kinase Complex With Bvdu-Mp And Adp
authors L.E.Bird, J.Ren, A.Wright, K.D.Leslie, B.Degreve, J.Balzarini, D.K
compound source
Molecule: Thymidine Kinase
Chain: A, B, C, D
Synonym: Vzv-Tk
Ec: 2.7.1.21
Engineered: Yes
Organism_scientific: Human Herpesvirus 3
Organism_common: Varicella-Zoster Virus
Organism_taxid: 10335
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p1vzv-Tk
symmetry Space Group: P 1 21 1
R_factor 0.235 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.700 54.200 167.800 90.00 94.80 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand ADP, BVP enzyme Transferase E.C.2.7.1.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • thymidine kinase activity


  • Primary referenceCrystal structure of varicella zoster virus thymidine kinase., Bird LE, Ren J, Wright A, Leslie KD, Degreve B, Balzarini J, Stammers DK, J Biol Chem 2003 Jul 4;278(27):24680-7. Epub 2003 Apr 9. PMID:12686543
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (206 Kb) [Save to disk]
  • Biological Unit Coordinates (1osn.pdb1.gz) 103 Kb
  • Biological Unit Coordinates (1osn.pdb2.gz) 101 Kb
  • Biological Unit Coordinates (1osn.pdb3.gz) 200 Kb
  • LPC: Ligand-Protein Contacts for 1OSN
  • CSU: Contacts of Structural Units for 1OSN
  • Likely Quarternary Molecular Structure file(s) for 1OSN
  • Structure Factors (250 Kb)
  • Retrieve 1OSN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OSN from S2C, [Save to disk]
  • Re-refined 1osn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1OSN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OSN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OSN, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1osna_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1osnb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1osnc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1osnd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1osn_C] [1osn_B] [1osn_D] [1osn] [1osn_A]
  • SWISS-PROT database: [P0C0E6]
  • Domain organization of [KITH_VZVO] by SWISSPFAM
  • Other resources with information on 1OSN
  • Community annotation for 1OSN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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