1OXH Transferase date Apr 02, 2003
title The Crystal Structure Of Beta-Ketoacyl-[Acyl Carrier Protein II From Streptococcus Pneumoniae, Triclinic Form
authors A.C.Price, C.O.Rock, S.W.White
compound source
Molecule: Beta Ketoacyl-Acyl Carrier Protein Synthase
Chain: A, B, C, D
Synonym: Beta Ketoacyl-Acyl Carrier Protein Synthase II
Ec: 2.3.1.41
Engineered: Yes
Organism_scientific: Streptococcus Pneumoniae
Organism_taxid: 1313
Strain: Rn4220
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.208 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.520 71.646 96.100 89.83 83.09 69.15
method X-Ray Diffractionresolution 2.09 Å
ligand MG enzyme Transferase E.C.2.3.1.41 BRENDA
related structures by homologous chain: 1OX0
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceThe 1.3-Angstrom-resolution crystal structure of beta-ketoacyl-acyl carrier protein synthase II from Streptococcus pneumoniae., Price AC, Rock CO, White SW, J Bacteriol 2003 Jul;185(14):4136-43. PMID:12837788
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (251 Kb) [Save to disk]
  • Biological Unit Coordinates (1oxh.pdb1.gz) 124 Kb
  • Biological Unit Coordinates (1oxh.pdb2.gz) 124 Kb
  • LPC: Ligand-Protein Contacts for 1OXH
  • CSU: Contacts of Structural Units for 1OXH
  • Likely Quarternary Molecular Structure file(s) for 1OXH
  • Structure Factors (1092 Kb)
  • Retrieve 1OXH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OXH from S2C, [Save to disk]
  • Re-refined 1oxh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1OXH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OXH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OXH, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1oxha1, region A:2-251 [Jmol] [rasmolscript] [script source]
        - Domain d1oxha2, region A:252-409 [Jmol] [rasmolscript] [script source]
        - Domain d1oxhb1, region B:2-251 [Jmol] [rasmolscript] [script source]
        - Domain d1oxhb2, region B:252-409 [Jmol] [rasmolscript] [script source]
        - Domain d1oxhc1, region C:2-251 [Jmol] [rasmolscript] [script source]
        - Domain d1oxhc2, region C:252-409 [Jmol] [rasmolscript] [script source]
        - Domain d1oxhd1, region D:2-251 [Jmol] [rasmolscript] [script source]
        - Domain d1oxhd2, region D:252-409 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1oxh] [1oxh_D] [1oxh_C] [1oxh_A] [1oxh_B]
  • SWISS-PROT database: [Q9FBC2]
  • Domain organization of [Q9FBC2_STRPN] by SWISSPFAM
  • Other resources with information on 1OXH
  • Community annotation for 1OXH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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