1OXW Plant Protein date Apr 03, 2003
title The Crystal Structure Of Semet Patatin
authors T.J.Rydel, J.M.Williams, E.Krieger, F.Moshiri, W.C.Stallings, S.M J.C.Pershing, J.P.Purcell, M.F.Alibhai
compound source
Molecule: Patatin
Chain: A, B, C
Engineered: Yes
Mutation: Yes
 Organism_scientific: Solanum Cardiophyllum
Organism_taxid: 160510
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_variant: B834(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
symmetry Space Group: C 2 2 21
R_factor 0.220 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.180 171.420 129.880 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand MSE enzyme
related structures by homologous chain: 1DP4, 1T34
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceThe crystal structure, mutagenesis, and activity studies reveal that patatin is a lipid acyl hydrolase with a Ser-Asp catalytic dyad., Rydel TJ, Williams JM, Krieger E, Moshiri F, Stallings WC, Brown SM, Pershing JC, Purcell JP, Alibhai MF, Biochemistry 2003 Jun 10;42(22):6696-708. PMID:12779324
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (186 Kb) [Save to disk]
  • Biological Unit Coordinates (1oxw.pdb1.gz) 179 Kb
  • LPC: Ligand-Protein Contacts for 1OXW
  • CSU: Contacts of Structural Units for 1OXW
  • Likely Quarternary Molecular Structure file(s) for 1OXW
  • Retrieve 1OXW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OXW from S2C, [Save to disk]
    • View 1OXW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1OXW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OXW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1oxwa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1oxwb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1oxwc_, region C [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1oxw_C] [1oxw_A] [1oxw_B] [1oxw]
  • SWISS-PROT database: [Q8LPW4]
  • Domain organization of [PAT17_SOLCD] by SWISSPFAM
    • Other resources with information on 1OXW
  • Community annotation for 1OXW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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