1OY2 Signaling Protein date Apr 03, 2003
title Coupling Of Folding And Binding In The Ptb Domain Of The Sig Protein Shc
authors A.Farooq, L.Zeng, K.S.Yan, K.S.Ravichandran, M.M.Zhou
compound source
Molecule: Shc Transforming Protein
Chain: A
Fragment: Ptb Domain
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Shc
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
methodSolution NMR
related structures by homologous chain: 1N3H, 1SHC
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCoupling of folding and binding in the PTB domain of the signaling protein Shc., Farooq A, Zeng L, Yan KS, Ravichandran KS, Zhou MM, Structure (Camb) 2003 Aug;11(8):905-13. PMID:12906822
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (1oy2.pdb1.gz) 48 Kb
  • CSU: Contacts of Structural Units for 1OY2
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1OY2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OY2 from S2C, [Save to disk]
    • View 1OY2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1OY2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OY2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1oy2a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1oy2] [1oy2_A]
  • SWISS-PROT database: [P29353]
  • Domain organization of [SHC1_HUMAN] by SWISSPFAM
  • Domain found in 1OY2: [PTB ] by SMART
    • Other resources with information on 1OY2
  • Community annotation for 1OY2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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