1OZZ Antifungal Protein date Apr 10, 2003
title Nmr Structure Of Antifungal Defensin Ard1 From Archaeoprepon
authors C.Landon, M.Guenneugues, F.Barbault, M.Legrain, L.Menin, V.Schott F.Vovelle, J.L.Dimarcq
compound source
Molecule: Defensin Ard1
Chain: A
Engineered: Yes
 Organism_scientific: Archaeoprepona Demophon
Organism_taxid: 191427
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pem2
methodSolution NMR
related structures by homologous chain: 1P00
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceLead optimization of antifungal peptides with 3D NMR structures analysis., Landon C, Barbault F, Legrain M, Menin L, Guenneugues M, Schott V, Vovelle F, Dimarcq JL, Protein Sci 2004 Mar;13(3):703-13. PMID:14978308
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (1ozz.pdb1.gz) 11 Kb
  • CSU: Contacts of Structural Units for 1OZZ
  • Retrieve 1OZZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OZZ from S2C, [Save to disk]
    • View 1OZZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1OZZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1OZZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ozza_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ozz_A] [1ozz]
  • SWISS-PROT database: [P84156]
  • Domain organization of [DEFN_ARCDE] by SWISSPFAM
  • Domain found in 1OZZ: [Knot1 ] by SMART
    • Other resources with information on 1OZZ
  • Community annotation for 1OZZ at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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