1P04 Hydrolase Hydrolase Inhibitor date Apr 24, 1989
title Structure Analysis Of Specificity. Alpha-Lytic Protease Comp Analogues Of Reaction Intermediates
authors R.Bone, D.A.Agard
compound source
Molecule: Alpha-Lytic Protease
Chain: A
Ec: 3.4.21.12
Engineered: Yes
 Organism_scientific: Lysobacter Enzymogenes
Organism_taxid: 69

Molecule: Methoxysuccinyl-Ala-Ala-Pro-Isoleucine Boronic Ac Inhibitor;
Chain: P
Engineered: Yes
Synthetic: Yes
symmetry Space Group: P 32 2 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.300 66.300 80.310 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.55 Å
ligand B2I, SO4 enzyme Hydrolase E.C.3.4.21.12 BRENDA
related structures by homologous chain: 4PRO
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural analysis of specificity: alpha-lytic protease complexes with analogues of reaction intermediates., Bone R, Frank D, Kettner CA, Agard DA, Biochemistry 1989 Sep 19;28(19):7600-9. PMID:2611204
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (1p04.pdb1.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 1P04
  • CSU: Contacts of Structural Units for 1P04
  • Likely Quarternary Molecular Structure file(s) for 1P04
  • Retrieve 1P04 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1P04 from S2C, [Save to disk]
    • View 1P04 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1P04
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1P04, from MSDmotif at EBI
  • Genome occurence of 1P04's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1p04a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1p04_A] [1p04] [1p04_P]
  • SWISS-PROT database: [P00778]
  • Domain organization of [PRLA_LYSEN] by SWISSPFAM
    • Other resources with information on 1P04
  • Community annotation for 1P04 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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