1P4X Transcription date Apr 24, 2003
title Crystal Structure Of Sars Protein From Staphylococcus Aureus
authors R.Li, A.C.Manna, S.Dai, A.L.Cheung, G.Zhang
compound source
Molecule: Staphylococcal Accessory Regulator A Homologue
Chain: A
Engineered: Yes
 Organism_scientific: Staphylococcus Aureus
Organism_taxid: 1280
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bcl-21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet14b
symmetry Space Group: P 65 2 2
R_factor 0.240 R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.887 84.887 195.743 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
note 1P4X is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the SarS protein from Staphylococcus aureus., Li R, Manna AC, Dai S, Cheung AL, Zhang G, J Bacteriol 2003 Jul;185(14):4219-25. PMID:12837797
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (1p4x.pdb1.gz) 44 Kb
  • CSU: Contacts of Structural Units for 1P4X
  • Likely Quarternary Molecular Structure file(s) for 1P4X
  • Structure Factors (224 Kb)
  • Retrieve 1P4X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1P4X from S2C, [Save to disk]
  • Re-refined 1p4x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1P4X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1P4X
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1P4X, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1p4xa1, region A:1-125 [Jmol] [rasmolscript] [script source]
        - Domain d1p4xa2, region A:126-250 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1p4x_A] [1p4x]
  • SWISS-PROT database: [P0C0R2] [Q2G1N7]
  • Domain organization of [SARS_STAA1] [SARS_STAA8] by SWISSPFAM
    • Other resources with information on 1P4X
  • Community annotation for 1P4X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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