1P79 Rna date Apr 30, 2003
title Crystal Structure Of A Bulged Rna Tetraplex: Implications Fo Binding Site In Rna Tetraplex
authors B.Pan, Y.Xiong, K.Shi, M.Sundaralingam
compound source
Molecule: 5'-R(Upgpupgpgpu)-3'
Chain: A
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 4 21 2
R_factor 0.127 R_Free 0.136
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.014 35.014 22.257 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.10 Å
ligand K enzyme
Primary referenceCrystal structure of a bulged RNA tetraplex at 1.1 a resolution: implications for a novel binding site in RNA tetraplex., Pan B, Xiong Y, Shi K, Sundaralingam M, Structure (Camb) 2003 Nov;11(11):1423-30. PMID:14604532
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (13 Kb) [Save to disk]
  • Biological Unit Coordinates (1p79.pdb1.gz) 16 Kb
  • LPC: Ligand-Protein Contacts for 1P79
  • CSU: Contacts of Structural Units for 1P79
  • Likely Quarternary Molecular Structure file(s) for 1P79
  • Structure Factors (40 Kb)
  • Retrieve 1P79 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1P79 from S2C, [Save to disk]
    • View 1P79 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1P79
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1P79, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1p79_A] [1p79]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1P79
  • Community annotation for 1P79 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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