1P9Q Structural Genomics, Unknown Function date May 12, 2003
title Structure Of A Hypothetical Protein Af0491 From Archaeoglobu
authors A.Savchenko, E.Evdokimova, T.Skarina, C.H.Arrowsmith, A.M.Edward A.Bochkarev
compound source
Molecule: Hypothetical Protein Af0491
Chain: C
Engineered: Yes
 Organism_scientific: Archaeoglobus Fulgidus
Organism_taxid: 2234
Gene: Af0491
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15
symmetry Space Group: P 1
R_factor 0.219 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.875 44.254 61.418 92.74 118.02 109.67
method X-Ray Diffractionresolution 2.00 Å
related structures by homologous chain: 1T95
Gene
Ontology
ChainFunctionProcessComponent
C


Primary referenceThe shwachman-bodian-diamond syndrome protein family is involved in RNA metabolism., Savchenko A, Krogan N, Cort JR, Evdokimova E, Lew JM, Yee AA, Sanchez-Pulido L, Andrade MA, Bochkarev A, Watson JD, Kennedy MA, Greenblatt J, Hughes T, Arrowsmith CH, Rommens JM, Edwards AM, J Biol Chem 2005 May 13;280(19):19213-20. Epub 2005 Feb 8. PMID:15701634
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (1p9q.pdb1.gz) 40 Kb
  • CSU: Contacts of Structural Units for 1P9Q
  • Likely Quarternary Molecular Structure file(s) for 1P9Q
  • Structure Factors (296 Kb)
  • Retrieve 1P9Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1P9Q from S2C, [Save to disk]
  • Re-refined 1p9q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1P9Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1P9Q
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1P9Q, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1p9qc3, region C:162-234 [Jmol] [rasmolscript] [script source]
        - Domain d1p9qc2, region C:2-86 [Jmol] [rasmolscript] [script source]
        - Domain d1p9qc1, region C:87-161 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1p9q] [1p9q_C]
  • SWISS-PROT database: [O29759]
  • Domain organization of [SDO1_ARCFU] by SWISSPFAM
    • Other resources with information on 1P9Q
  • Community annotation for 1P9Q at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science