1PJG Dna-Rna Hybrid date Jun 02, 2003
title Rnadna Hybrid Decamer Of Caaagaaaagcttttctttg
authors M.L.Kopka, L.Lavelle, G.W.Han, H.L.Ng, R.E.Dickerson
compound source
Molecule: 5'-R(Cpapapapgpapapapapg)-3'
Chain: A
Fragment: Polypurine Tract Of Hiv-1
Engineered: Yes
 Synthetic: Yes

Molecule: 5'-D(Cptptptptpcptptptpg)-3'
Chain: B
Engineered: Yes
Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
25.701 41.073 46.116 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.15 Å
ligand CA enzyme
Primary referenceAn unusual sugar conformation in the structure of an RNA/DNA decamer of the polypurine tract may affect recognition by RNase H., Kopka ML, Lavelle L, Han GW, Ng HL, Dickerson RE, J Mol Biol. 2003 Dec 5;334(4):653-65. PMID:14636594
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (1pjg.pdb1.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 1PJG
  • CSU: Contacts of Structural Units for 1PJG
  • Likely Quarternary Molecular Structure file(s) for 1PJG
  • Structure Factors (147 Kb)
  • Retrieve 1PJG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PJG from S2C, [Save to disk]
  • Re-refined 1pjg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1PJG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1PJG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PJG, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pjg_B] [1pjg] [1pjg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1PJG
  • Community annotation for 1PJG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science