1PL3 Oxidoreductase date Jun 06, 2003
title Cytochrome Domain Of Cellobiose Dehydrogenase, M65h Mutant
authors F.A.J.Rotsaert, B.M.Hallberg, S.De Vries, P.Moenne-Loccoz, C.Div M.H.Gold
compound source
Molecule: Cellobiose Dehydrogenase
Chain: A, B
Fragment: Cytochrome Type B Heme Domain
Synonym: Cdh, Cellobiose-Quinone Oxidoreductase
Ec: 1.1.99.18
Engineered: Yes
Mutation: Yes
Organism_scientific: Phanerochaete Chrysosporium
Organism_taxid: 5306
Gene: Cdh-1 And Cdh-2
Expression_system: Phanerochaete Chrysosporium
Expression_system_taxid: 5306
Expression_system_strain: Ogc316-7
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pugc1
symmetry Space Group: P 65
R_factor 0.173 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
139.033 139.033 52.668 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand 1PG, CD, HEM, NAG, PCA enzyme Oxidoreductase E.C.1.1.99.18 BRENDA
related structures by homologous chain: 1D7D
Primary referenceBiophysical and structural analysis of a novel heme B iron ligation in the flavocytochrome cellobiose dehydrogenase., Rotsaert FA, Hallberg BM, de Vries S, Moenne-Loccoz P, Divne C, Renganathan V, Gold MH, J Biol Chem 2003 Aug 29;278(35):33224-31. Epub 2003 Jun 9. PMID:12796496
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (1pl3.pdb1.gz) 35 Kb
  • Biological Unit Coordinates (1pl3.pdb2.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 1PL3
  • CSU: Contacts of Structural Units for 1PL3
  • Likely Quarternary Molecular Structure file(s) for 1PL3
  • Structure Factors (342 Kb)
  • Retrieve 1PL3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PL3 from S2C, [Save to disk]
  • Re-refined 1pl3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1PL3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PL3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PL3, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1pl3a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1pl3b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pl3_A] [1pl3_B] [1pl3]
  • SWISS-PROT database: [Q01738]
  • Domain organization of [CDH_PHACH] by SWISSPFAM
  • Domain found in 1PL3: [DoH ] by SMART
  • Other resources with information on 1PL3
  • Community annotation for 1PL3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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