1POX Oxidoreductase(Oxygen As Acceptor) date Nov 09, 1993
title The Refined Structures Of A Stabilized Mutant And Of Wild-Ty Pyruvate Oxidase From Lactobacillus Plantarum
authors Y.A.Muller, G.E.Schulz
compound source
Molecule: Pyruvate Oxidase
Chain: A, B
Ec: 1.2.3.3
Engineered: Yes
 Organism_scientific: Lactobacillus Plantarum
Organism_taxid: 1590
symmetry Space Group: C 2 2 21
R_factor 0.162 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.600 155.400 167.100 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand FAD, GOL, MG, NA, TPP enzyme Oxidoreductase E.C.1.2.3.3 BRENDA
related structures by homologous chain: 1Y9D
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe refined structures of a stabilized mutant and of wild-type pyruvate oxidase from Lactobacillus plantarum., Muller YA, Schumacher G, Rudolph R, Schulz GE, J Mol Biol 1994 Apr 1;237(3):315-35. PMID:8145244
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (202 Kb) [Save to disk]
  • Biological Unit Coordinates (1pox.pdb1.gz) 389 Kb
  • LPC: Ligand-Protein Contacts for 1POX
  • CSU: Contacts of Structural Units for 1POX
  • Likely Quarternary Molecular Structure file(s) for 1POX
  • Structure Factors (504 Kb)
  • Retrieve 1POX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1POX from S2C, [Save to disk]
  • Re-refined 1pox structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1POX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1POX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1POX, from MSDmotif at EBI
  • Genome occurence of 1POX's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1poxa1, region A:183-365 [Jmol] [rasmolscript] [script source]
        - Domain d1poxa3, region A:366-593 [Jmol] [rasmolscript] [script source]
        - Domain d1poxa2, region A:9-182 [Jmol] [rasmolscript] [script source]
        - Domain d1poxb1, region B:183-365 [Jmol] [rasmolscript] [script source]
        - Domain d1poxb3, region B:366-593 [Jmol] [rasmolscript] [script source]
        - Domain d1poxb2, region B:9-182 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pox] [1pox_A] [1pox_B]
  • SWISS-PROT database: [P37063]
  • Domain organization of [POXB_LACPL] by SWISSPFAM
    • Other resources with information on 1POX
  • Community annotation for 1POX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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