1PU0	Oxidoreductase	date	Jun 23, 2003
title	Structure Of Human Cu,Zn Superoxide Dismutase
authors	M.Didonato, L.Craig, M.E.Huff, M.M.Thayer, R.M.F.Cardoso, C.J.Kas T.P.Lo, C.K.Bruns, E.T.Powers, J.W.Kelly, E.D.Getzoff, J.A.Taine
compound		source
Molecule: Superoxide Dismutase [Cu-Zn] Chain: A, B, C, D, E, F, G, H, I, J Ec: 1.15.1.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Sod1 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 2 2 21	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 203.580 165.680 144.150 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	CU1, SO4, ZN	enzyme	Oxidoreductase E.C.1.15.1.1 BRENDA
related structures	by homologous chain: 1E9P, 1E9Q
Gene Ontology	Chain Function Process Component F, A, J, E, B, H, C, D, I, G superoxide dismutase activit... protein binding anterograde axonal transport... retrograde axonal transport
Primary reference	ALS mutants of human superoxide dismutase form fibrous aggregates via framework destabilization., DiDonato M, Craig L, Huff ME, Thayer MM, Cardoso RM, Kassmann CJ, Lo TP, Bruns CK, Powers ET, Kelly JW, Getzoff ED, Tainer JA, J Mol Biol 2003 Sep 19;332(3):601-15. PMID:12963370

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (251 Kb) [Save to disk] Biological Unit Coordinates (1pu0.pdb1.gz) 53 Kb Biological Unit Coordinates (1pu0.pdb2.gz) 52 Kb Biological Unit Coordinates (1pu0.pdb3.gz) 54 Kb Biological Unit Coordinates (1pu0.pdb4.gz) 51 Kb Biological Unit Coordinates (1pu0.pdb5.gz) 52 Kb LPC: Ligand-Protein Contacts for 1PU0 CSU: Contacts of Structural Units for 1PU0 Likely Quarternary Molecular Structure file(s) for 1PU0 Structure Factors (2509 Kb) Retrieve 1PU0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1PU0 from S2C, [Save to disk] Re-refined 1pu0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1PU0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1PU0

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1PU0, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1pu0a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1pu0b_, region B [Jmol] [rasmolscript] [script source]     - Domain d1pu0c_, region C [Jmol] [rasmolscript] [script source]     - Domain d1pu0d_, region D [Jmol] [rasmolscript] [script source]     - Domain d1pu0e_, region E [Jmol] [rasmolscript] [script source]     - Domain d1pu0f_, region F [Jmol] [rasmolscript] [script source]     - Domain d1pu0g_, region G [Jmol] [rasmolscript] [script source]     - Domain d1pu0h_, region H [Jmol] [rasmolscript] [script source]     - Domain d1pu0i_, region I [Jmol] [rasmolscript] [script source]     - Domain d1pu0j_, region J [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1pu0_B] [1pu0_J] [1pu0_H] [1pu0] [1pu0_C] [1pu0_F] [1pu0_G] [1pu0_A] [1pu0_E] [1pu0_I] [1pu0_D] SWISS-PROT database: [P00441] Domain organization of [SODC_HUMAN] by SWISSPFAM

Other resources with information on 1PU0

Community annotation for 1PU0 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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