1PUX Transferase date Jun 25, 2003
title Nmr Solution Structure Of Bef3-Activated Spo0f, 20 Conformer
authors A.K.Gardino, B.F.Volkman, H.S.Cho, S.Y.Lee, D.E.Wemmer, D.Kern
compound source
Molecule: Sporulation Initiation Phosphotransferase F
Chain: A
Synonym: Stage 0 Sporulation Protein F
Ec: 2.7.-.-
Engineered: Yes
Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Gene: Spo0f
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) With Pacyc
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a (Novagen)
methodSolution NMR
ligand
enzyme Transferase E.C.2.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe NMR solution structure of BeF(3)(-)-activated Spo0F reveals the conformational switch in a phosphorelay system., Gardino AK, Volkman BF, Cho HS, Lee SY, Wemmer DE, Kern D, J Mol Biol 2003 Aug 1;331(1):245-54. PMID:12875849
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (678 Kb) [Save to disk]
  • Biological Unit Coordinates (1pux.pdb1.gz) 34 Kb
  • CSU: Contacts of Structural Units for 1PUX
  • Original NMR restraints for 1PUX from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1PUX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1PUX from S2C, [Save to disk]
  • View 1PUX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1PUX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1PUX, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1puxa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1pux_A] [1pux]
  • SWISS-PROT database: [P06628]
  • Domain organization of [SP0F_BACSU] by SWISSPFAM
  • Domain found in 1PUX: [REC ] by SMART
  • Other resources with information on 1PUX
  • Community annotation for 1PUX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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